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BMCBI
2010
114views more  BMCBI 2010»
13 years 10 months ago
Detecting variants with Metabolic Design, a new software tool to design probes for explorative functional DNA microarray develop
Background: Microorganisms display vast diversity, and each one has its own set of genes, cell components and metabolic reactions. To assess their huge unexploited metabolic poten...
Sébastien Terrat, Eric Peyretaillade, Olivi...
BMCBI
2002
100views more  BMCBI 2002»
13 years 9 months ago
An algorithm and program for finding sequence specific oligo-nucleotide probes for species identification
Background: The identification of species or species groups with specific oligo-nucleotides as molecular signatures is becoming increasingly popular for bacterial samples. However...
Alexander E. Pozhitkov, Diethard Tautz
BMCBI
2010
130views more  BMCBI 2010»
13 years 10 months ago
MLPAinter for MLPA interpretation: an integrated approach for the analysis, visualisation and data management of Multiplex Ligat
Background: Multiplex Ligation-Dependent Probe Amplification (MLPA) is an application that can be used for the detection of multiple chromosomal aberrations in a single experiment...
Ronald van Eijk, Paul H. C. Eilers, Remco Natt&eac...
PC
2010
101views Management» more  PC 2010»
13 years 4 months ago
An efficient parallel implementation of the MSPAI preconditioner
We present an efficient implementation of the Modified SParse Approximate Inverse (MSPAI) preconditioner. MSPAI generalizes the class of preconditioners based on Frobenius norm mi...
Thomas Huckle, A. Kallischko, A. Roy, M. Sedlacek,...
CAP
2010
13 years 4 months ago
Parallel sparse polynomial interpolation over finite fields
We present a probabilistic algorithm to interpolate a sparse multivariate polynomial over a finite field, represented with a black box. Our algorithm modifies the algorithm of Ben...
Seyed Mohammad Mahdi Javadi, Michael B. Monagan