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    » Problems on RNA Secondary Structure Prediction and Design
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    BMCBI
    2008
    109views more  BMCBI 2008»
    ConStruct: Improved construction of RNA consensus structures
    13 years 8 months ago
    ConStruct: Improved construction of RNA consensus structures
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    Background: Aligning homologous non-coding RNAs (ncRNAs) correctly in terms of sequence and structure is an unresolved problem, due to both mathematical complexity and imperfect s...
    Andreas Wilm, Kornelia Linnenbrink, Gerhard Steger
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    IPPS
    2007
    IEEE
    148views Distributed And Parallel Com...» more  IPPS 2007»
    RNAVLab: A unified environment for computational RNA structure analysis based on grid computing technology
    14 years 2 months ago
    RNAVLab: A unified environment for computational RNA structure analysis based on grid computing technology
    Download  gcl.cis.udel.edu
    Ribonucleic acid (RNA) molecules play important roles in many biological processes including gene expression and regulation. An RNA molecule is a linear polymer which folds back o...
    Michela Taufer, Ming-Ying Leung, Kyle L. Johnson, ...
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    GCB
    2010
    Springer
    198views Biometrics» more  GCB 2010»
    RNALfoldz: Efficient Prediction of Thermodynamically Stable, Local Secondary Structures
    13 years 6 months ago
    RNALfoldz: Efficient Prediction of Thermodynamically Stable, Local Secondary Structures
    Download  www.tbi.univie.ac.at
    Abstract: The search for local RNA secondary structures and the annotation of unusually stable folding regions in genomic sequences are two well motivated bioinformatic problems. I...
    Andreas R. Gruber, Stephan H. F. Bernhart, You Zho...
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    BMCBI
    2007
    109views more  BMCBI 2007»
    Computational RNA secondary structure design: empirical complexity and improved methods
    13 years 8 months ago
    Computational RNA secondary structure design: empirical complexity and improved methods
    Download  www.biomedcentral.com
    Background: We investigate the empirical complexity of the RNA secondary structure design problem, that is, the scaling of the typical difficulty of the design task for various cl...
    Rosalía Aguirre-Hernández, Holger H....
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    BIOINFORMATICS
    2007
    76views more  BIOINFORMATICS 2007»
    RNA Sampler: a new sampling based algorithm for common RNA secondary structure prediction and structural alignment
    13 years 8 months ago
    RNA Sampler: a new sampling based algorithm for common RNA secondary structure prediction and structural alignment
    Download  ural.wustl.edu
    Xing Xu, Yongmei Ji, Gary D. Stormo
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