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IPPS
2010
IEEE
13 years 6 months ago
pFANGS: Parallel high speed sequence mapping for Next Generation 454-roche Sequencing reads
Millions of DNA sequences (reads) are generated by Next Generation Sequencing machines everyday. There is a need for high performance algorithms to map these sequences to the refer...
Sanchit Misra, Ramanathan Narayanan, Wei-keng Liao...
PPOPP
2012
ACM
12 years 3 months ago
Massively parallel breadth first search using a tree-structured memory model
Analysis of massive graphs has emerged as an important area for massively parallel computation. In this paper, it is shown how the Fresh Breeze trees-of-chunks memory model may be...
Tom St. John, Jack B. Dennis, Guang R. Gao
MOBILWARE
2009
ACM
14 years 2 months ago
Pervasive Adaptation in Car Crowds
Abstract. Advances in the miniaturization and embedding of electronics for microcomputing, communication and sensor/actuator systems, have fertilized the pervasion of technology in...
Alois Ferscha, Andreas Riener
IPPS
2008
IEEE
14 years 2 months ago
Massively parallel cosmological simulations with ChaNGa
Cosmological simulators are an important component in the study of the formation of galaxies and large scale structures, and can help answer many important questions about the uni...
Pritish Jetley, Filippo Gioachin, Celso L. Mendes,...
SAC
2005
ACM
14 years 1 months ago
Graphical rule-based representation of signal-transduction networks
The process by which a cell senses and responds to its environment, as in signal transduction, is often mediated by a network of protein-protein interactions, in which proteins co...
James R. Faeder, Michael L. Blinov, William S. Hla...