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» Programming by Numbers: A Programming Method for Novices
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BMCBI
2007
173views more  BMCBI 2007»
13 years 7 months ago
Ringo - an R/Bioconductor package for analyzing ChIP-chip readouts
Background: Chromatin immunoprecipitation combined with DNA microarrays (ChIP-chip) is a high-throughput assay for DNA-protein-binding or post-translational chromatin/histone modi...
Joern Toedling, Oleg Sklyar, Tammo Krueger, Jenny ...
CCGRID
2008
IEEE
13 years 9 months ago
High Performance Relay Mechanism for MPI Communication Libraries Run on Multiple Private IP Address Clusters
We have been developing a Grid-enabled MPI communication library called GridMPI, which is designed to run on multiple clusters connected to a wide-area network. Some of these clust...
Ryousei Takano, Motohiko Matsuda, Tomohiro Kudoh, ...
BIBE
2005
IEEE
126views Bioinformatics» more  BIBE 2005»
14 years 1 months ago
Highly Scalable and Accurate Seeds for Subsequence Alignment
We propose a method for finding seeds for the local alignment of two nucleotide sequences. Our method uses randomized algorithms to find approximate seeds. We present a dynamic ...
Abhijit Pol, Tamer Kahveci
ISOLA
2004
Springer
14 years 27 days ago
Static Timing Analysis of Real-Time Operating System Code
Methods for Worst-Case Execution Time (WCET) analysis have been known for some time, and recently commercial tools have emerged. However, the technique has so far not been much use...
Daniel Sandell, Andreas Ermedahl, Jan Gustafsson, ...
BMCBI
2010
155views more  BMCBI 2010»
13 years 7 months ago
A flexible R package for nonnegative matrix factorization
Background: Nonnegative Matrix Factorization (NMF) is an unsupervised learning technique that has been applied successfully in several fields, including signal processing, face re...
Renaud Gaujoux, Cathal Seoighe