Background: Biologically active sequence motifs often have positional preferences with respect to a genomic landmark. For example, many known transcription factor binding sites (T...
Nak-Kyeong Kim, Kannan Tharakaraman, Leonardo Mari...
Background: In proteomics experiments, database-search programs are the method of choice for protein identification from tandem mass spectra. As amino acid sequence databases grow...
Jason W. H. Wong, Matthew J. Sullivan, Hugh M. Car...
Background: A goal of proteomics is to distinguish between states of a biological system by identifying protein expression differences. Liu et al. demonstrated a method to perform...
Paulo C. Carvalho, Juliana S. G. Fischer, Emily I....
In this paper, we present a term rewriting based library for manipulating Java bytecode. We define a mapping from bytecode programs to algebraic terms, and we use Tom, an extensi...
Emilie Balland, Pierre-Etienne Moreau, Antoine Rei...
—Static analysis tools have been widely used to detect potential defects without executing programs. It helps programmers raise the awareness about subtle correctness issues in t...