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BMCBI
2007
160views more  BMCBI 2007»
13 years 7 months ago
Convergent algorithms for protein structural alignment
Background: Many algorithms exist for protein structural alignment, based on internal protein coordinates or on explicit superposition of the structures. These methods are usually...
Leandro Martínez, Roberto Andreani, Jos&eac...
BMCBI
2008
173views more  BMCBI 2008»
13 years 7 months ago
Improved machine learning method for analysis of gas phase chemistry of peptides
Background: Accurate peptide identification is important to high-throughput proteomics analyses that use mass spectrometry. Search programs compare fragmentation spectra (MS/MS) o...
Allison Gehrke, Shaojun Sun, Lukasz A. Kurgan, Nat...
CL
2010
Springer
13 years 7 months ago
Isolating untrusted software extensions by custom scoping rules
In a modern programming language, scoping rules determine the visibility of names in various regions of a program [15]. In this work, we examine the idea of allowing an applicatio...
Philip W. L. Fong, Simon A. Orr
DEBU
2008
136views more  DEBU 2008»
13 years 7 months ago
Towards a Unified Declarative and Imperative XQuery Processor
Since the birth of XML, the processing of XML query languages like XQuery/XQueryP has been widely researched in the academic and industrial communities. Most of the approaches con...
Zhen Hua Liu, Anguel Novoselsky, Vikas Arora
BMCBI
2006
134views more  BMCBI 2006»
13 years 7 months ago
A statistical score for assessing the quality of multiple sequence alignments
Background: Multiple sequence alignment is the foundation of many important applications in bioinformatics that aim at detecting functionally important regions, predicting protein...
Virpi Ahola, Tero Aittokallio, Mauno Vihinen, Esa ...