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» Programs as polygraphs: computability and complexity
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BMCBI
2010
125views more  BMCBI 2010»
13 years 11 months ago
In-silico prediction of blood-secretory human proteins using a ranking algorithm
Background: Computational identification of blood-secretory proteins, especially proteins with differentially expressed genes in diseased tissues, can provide highly useful inform...
Qi Liu, Juan Cui, Qiang Yang, Ying Xu
BMCBI
2010
118views more  BMCBI 2010»
13 years 11 months ago
Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests
Background: To understand the evolutionary role of Lateral Gene Transfer (LGT), accurate methods are needed to identify transferred genes and infer their timing of acquisition. Ph...
Sophie S. Abby, Eric Tannier, Manolo Gouy, Vincent...
BMCBI
2006
98views more  BMCBI 2006»
13 years 11 months ago
Scanning sequences after Gibbs sampling to find multiple occurrences of functional elements
Background: Many DNA regulatory elements occur as multiple instances within a target promoter. Gibbs sampling programs for finding DNA regulatory elements de novo can be prohibiti...
Kannan Tharakaraman, Leonardo Mariño-Ram&ia...
BMCBI
2007
148views more  BMCBI 2007»
13 years 11 months ago
fREDUCE: Detection of degenerate regulatory elements using correlation with expression
Background: The precision of transcriptional regulation is made possible by the specificity of physical interactions between transcription factors and their cognate binding sites ...
Randy Z. Wu, Christina Chaivorapol, Jiashun Zheng,...
AI
2002
Springer
13 years 10 months ago
The size distribution for Markov equivalence classes of acyclic digraph models
Bayesian networks, equivalently graphical Markov models determined by acyclic digraphs or ADGs (also called directed acyclic graphs or dags), have proved to be both effective and ...
Steven B. Gillispie, Michael D. Perlman