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» Progressive multiple alignment with constraints
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BMCBI
2005
125views more  BMCBI 2005»
13 years 9 months ago
Multiple sequence alignments of partially coding nucleic acid sequences
Background: High quality sequence alignments of RNA and DNA sequences are an important prerequisite for the comparative analysis of genomic sequence data. Nucleic acid sequences, ...
Roman R. Stocsits, Ivo L. Hofacker, Claudia Fried,...
BMCBI
2010
118views more  BMCBI 2010»
13 years 9 months ago
Towards realistic benchmarks for multiple alignments of non-coding sequences
Background: With the continued development of new computational tools for multiple sequence alignment, it is necessary today to develop benchmarks that aid the selection of the mo...
Jaebum Kim, Saurabh Sinha
NAR
2006
61views more  NAR 2006»
13 years 9 months ago
MAVL/StickWRLD: analyzing structural constraints using interpositional dependencies in biomolecular sequence alignments
The increasing availability of structurally aligned protein families has made it possible to use statistical methods to discover regions of interpositional dependenciesof residue ...
Hatice Gulcin Ozer, William C. Ray
ICIP
2002
IEEE
14 years 11 months ago
Video frame alignment in multiple views
Many events are captured using multiple cameras today. Frames of each video stream have to be synchronized and aligned to a common time axis before processing them. Synchronizatio...
Sujit Kuthirummal, C. V. Jawahar, P. J. Narayanan
BMCBI
2011
13 years 4 months ago
PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment
Background: The Monte Carlo simulation of sequence evolution is routinely used to assess the performance of phylogenetic inference methods and sequence alignment algorithms. Progr...
Botond Sipos, Tim Massingham, Gregory E. Jordan, N...