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CSMR
2008
IEEE
14 years 2 months ago
Aligning Software Maintenance to the Offshore Reality
With an ever-increasing amount of software in place, the importance and ubiquity of software maintenance is continuously growing. Another more recent trend is to “offshore” su...
Christian Seybold, Rudolf K. Keller
AINA
2008
IEEE
14 years 2 months ago
Protein Structure Comparison and Alignment Using Residue Contexts
We introduce a method for comparing protein structures using the notion of residue contexts based on protein Cα-atom backbones. The residue context is derived from the set of vec...
Tobias Sayre, Rahul Singh
NAR
2010
107views more  NAR 2010»
13 years 2 months ago
PLAST-ncRNA: Partition function Local Alignment Search Tool for non-coding RNA sequences
Alignment-based programs are valuable tools for finding potential homologs in genome sequences. Previously, it has been shown that partition function posterior probabilities attun...
Satish Chikkagoudar, Dennis R. Livesay, Usman Rosh...
RECOMB
2002
Springer
14 years 8 months ago
Significance Of inter-species matches when evolutionary rate varies
We develop techniques to estimate the statistical significance of gap-free alignments between two genomic DNA sequences, using human-mouse alignments as an example. The sequences ...
Jia Li, Webb Miller
BMCBI
2010
93views more  BMCBI 2010»
13 years 7 months ago
JunctionViewer: customizable annotation software for repeat-rich genomic regions
Background: Repeat-rich regions such as centromeres receive less attention than their gene-rich euchromatic counterparts because the former are difficult to assemble and analyze. ...
Thomas K. Wolfgruber, Gernot G. Presting