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BMCBI
2004
119views more  BMCBI 2004»
13 years 8 months ago
PASS2: an automated database of protein alignments organised as structural superfamilies
Background: The functional selection and three-dimensional structural constraints of proteins in nature often relates to the retention of significant sequence similarity between p...
Anirban Bhaduri, Ganesan Pugalenthi, Ramanathan So...
SIBGRAPI
2006
IEEE
14 years 2 months ago
Determining the branchings of 3D structures from respective 2D projections
This work describes a new framework for automatic extraction of 2D branching structures images obtained from 3D shapes, such as neurons and retinopathy images. The majority of met...
Jorge J. G. Leandro, Roberto M. Cesar, Luciano da ...
CC
2005
Springer
120views System Software» more  CC 2005»
14 years 2 months ago
Data Slicing: Separating the Heap into Independent Regions
In this paper, we present a formal description of data slicing, which is a type-directed program transformation technique that separates a program’s heap into several independent...
Jeremy Condit, George C. Necula
SSDBM
2006
IEEE
163views Database» more  SSDBM 2006»
14 years 2 months ago
ACache: Using Caching to Improve the Performance of Multiple Sequence Alignments
Multiple sequence alignment represents a class of powerful bioinformatics tools with many uses in computational biology ranging from discovery of characteristic motifs and conserv...
Xun Tu, Kajal T. Claypool, Cindy X. Chen
CSB
2004
IEEE
208views Bioinformatics» more  CSB 2004»
14 years 16 days ago
Pair Stochastic Tree Adjoining Grammars for Aligning and Predicting Pseudoknot RNA Structures
Motivation: Since the whole genome sequences for many species are currently available, computational predictions of RNA secondary structures and computational identifications of t...
Hiroshi Matsui, Kengo Sato, Yasubumi Sakakibara