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» Projective Alignment with Regions
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ACL
2006
13 years 9 months ago
Optimal Constituent Alignment with Edge Covers for Semantic Projection
Given a parallel corpus, semantic projection attempts to transfer semantic role annotations from one language to another, typically by exploiting word alignments. In this paper, w...
Sebastian Padó, Mirella Lapata
BMCBI
2007
126views more  BMCBI 2007»
13 years 7 months ago
Multiple non-collinear TF-map alignments of promoter regions
Background: The analysis of the promoter sequence of genes with similar expression patterns is a basic tool to annotate common regulatory elements. Multiple sequence alignments ar...
Enrique Blanco, Roderic Guigó, Xavier Messe...
BIOINFORMATICS
2007
74views more  BIOINFORMATICS 2007»
13 years 7 months ago
Simultaneous alignment and annotation of cis-regulatory regions
Genomic transcriptional processes rely heavily on the combinatorial binding of transcription factors on the upstream regions of genes. Analysis and complete characterization of su...
Abha Singh Bais, Steffen Grossmann, Martin Vingron
BMCBI
2004
96views more  BMCBI 2004»
13 years 7 months ago
Identification of regions in multiple sequence alignments thermodynamically suitable for targeting by consensus oligonucleotides
Background: Computer programs for the generation of multiple sequence alignments such as "Clustal W" allow detection of regions that are most conserved among many sequen...
Olga V. Matveeva, Brian T. Foley, Vladimir A. Nemt...
GISCIENCE
2008
Springer
117views GIS» more  GISCIENCE 2008»
13 years 8 months ago
Refining Topological Relations between Regions Considering Their Shapes
Topological relations are sometimes insufficient for differentiating spatial configurations of two objects with critical difference in their connection styles. In this paper, we pr...
Roland Billen, Yohei Kurata