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    » ProtRepeatsDB: a database of amino acid repeats in genomes
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    BMCBI
    2008
    128views more  BMCBI 2008»
    Pairwise covariance adds little to secondary structure prediction but improves the prediction of non-canonical local structure
    13 years 7 months ago
    Pairwise covariance adds little to secondary structure prediction but improves the prediction of non-canonical local structure
    Download  www.biomedcentral.com
    Background: Amino acid sequence probability distributions, or profiles, have been used successfully to predict secondary structure and local structure in proteins. Profile models ...
    Christopher Bystroff, Bobbie-Jo M. Webb-Robertson
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    BMCBI
    2006
    127views more  BMCBI 2006»
    Automatic discovery of cross-family sequence features associated with protein function
    13 years 7 months ago
    Automatic discovery of cross-family sequence features associated with protein function
    Download  www.biomedcentral.com
    Background: Methods for predicting protein function directly from amino acid sequences are useful tools in the study of uncharacterised protein families and in comparative genomic...
    Markus Brameier, Josien Haan, Andrea Krings, Rober...
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    NAR
    2006
    84views more  NAR 2006»
    Zinc Finger Tools: custom DNA-binding domains for transcription factors and nucleases
    13 years 7 months ago
    Zinc Finger Tools: custom DNA-binding domains for transcription factors and nucleases
    Download  www.scripps.edu
    Individual zinc finger (ZF) domains that recognize DNA triplets with high specificity and affinity can be used to create designer transcription factors and nucleases that are spec...
    Jeffrey G. Mandell, Carlos F. Barbas III
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    RECOMB
    2004
    Springer
    168views Computational Biology» more  RECOMB 2004»
    Mining protein family specific residue packing patterns from protein structure graphs
    14 years 8 months ago
    Mining protein family specific residue packing patterns from protein structure graphs
    Download  www.cs.unc.edu
    Finding recurring residue packing patterns, or spatial motifs, that characterize protein structural families is an important problem in bioinformatics. To this end, we apply a nov...
    Jun Huan, Wei Wang 0010, Deepak Bandyopadhyay, Jac...
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    ALMOB
    2006
    138views more  ALMOB 2006»
    A combinatorial optimization approach for diverse motif finding applications
    13 years 7 months ago
    A combinatorial optimization approach for diverse motif finding applications
    Download  www.almob.org
    Background: Discovering approximately repeated patterns, or motifs, in biological sequences is an important and widely-studied problem in computational molecular biology. Most fre...
    Elena Zaslavsky, Mona Singh
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