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BMCBI
2010
146views more  BMCBI 2010»
13 years 7 months ago
A pairwise residue contact area-based mean force potential for discrimination of native protein structure
Background: Considering energy function to detect a correct protein fold from incorrect ones is very important for protein structure prediction and protein folding. Knowledge-base...
Shahriar Arab, Mehdi Sadeghi, Changiz Eslahchi, Ha...
IDA
2006
Springer
13 years 7 months ago
Structural hidden Markov models: An application to handwritten numeral recognition
We introduce in this paper a generalization of the widely used hidden Markov models (HMM's), which we name "structural hidden Markov models" (SHMM). Our approach is ...
Djamel Bouchaffra, Jun Tan
BMCBI
2004
108views more  BMCBI 2004»
13 years 7 months ago
Enhanced protein domain discovery using taxonomy
Background: It is well known that different species have different protein domain repertoires, and indeed that some protein domains are kingdom specific. This information has not ...
Lachlan James M. Coin, Alex Bateman, Richard Durbi...
BMCBI
2007
168views more  BMCBI 2007»
13 years 7 months ago
Benchmarking consensus model quality assessment for protein fold recognition
Background: Selecting the highest quality 3D model of a protein structure from a number of alternatives remains an important challenge in the field of structural bioinformatics. M...
Liam J. McGuffin
ICML
2008
IEEE
14 years 8 months ago
Modeling interleaved hidden processes
Hidden Markov models assume that observations in time series data stem from some hidden process that can be compactly represented as a Markov chain. We generalize this model by as...
Niels Landwehr