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BMCBI
2010
88views more  BMCBI 2010»
13 years 8 months ago
Robust probabilistic superposition and comparison of protein structures
Background: Protein structure comparison is a central issue in structural bioinformatics. The standard dissimilarity measure for protein structures is the root mean square deviati...
Martin Mechelke, Michael Habeck
JOBIM
2000
14 years 5 days ago
Can We Have Confidence in a Tree Representation?
Abstract. A tree representation distance method, applied to any dissimilarity array, always gives a valued tree, even if the tree model is not appropriate. In the first part, we pr...
Alain Guénoche, Henri Garreta
GECCO
2007
Springer
154views Optimization» more  GECCO 2007»
14 years 2 months ago
A novel ab-initio genetic-based approach for protein folding prediction
In this paper, a model based on genetic algorithms for protein folding prediction is proposed. The most important features of the proposed approach are: i) Heuristic secondary str...
Sergio Raul Duarte Torres, David Camilo Becerra Ro...
CORR
2010
Springer
144views Education» more  CORR 2010»
13 years 8 months ago
CLP-based protein fragment assembly
Abstract. The paper investigates a novel approach, based on Constraint Logic Programming (CLP), to predict the 3D conformation of a protein via fragments assembly. The fragments ar...
Alessandro Dal Palù, Agostino Dovier, Feder...
BMCBI
2006
202views more  BMCBI 2006»
13 years 8 months ago
DWARF - a data warehouse system for analyzing protein families
Background: The emerging field of integrative bioinformatics provides the tools to organize and systematically analyze vast amounts of highly diverse biological data and thus allo...
Markus Fischer, Quan K. Thai, Melanie Grieb, J&uum...