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» Protein Model Representation and Construction
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BMCBI
2006
143views more  BMCBI 2006»
13 years 8 months ago
Application of protein structure alignments to iterated hidden Markov model protocols for structure prediction
Background: One of the most powerful methods for the prediction of protein structure from sequence information alone is the iterative construction of profile-type models. Because ...
Eric D. Scheeff, Philip E. Bourne
BIBM
2007
IEEE
101views Bioinformatics» more  BIBM 2007»
14 years 3 months ago
Improved Methods for Template-Matching in Electron-Density Maps Using Spherical Harmonics
An important problem in high-throughput protein crystallography is constructing a protein model from an electron-density map. Previous work by some of this paper’s authors [1] d...
Frank DiMaio, Ameet Soni, George N. Phillips, Jude...
BMCBI
2007
135views more  BMCBI 2007»
13 years 8 months ago
Sequence similarity is more relevant than species specificity in probabilistic backtranslation
Background: Backtranslation is the process of decoding a sequence of amino acids into the corresponding codons. All synthetic gene design systems include a backtranslation module....
Alfredo Ferro, Rosalba Giugno, Giuseppe Pigola, Al...
ITRE
2006
IEEE
14 years 2 months ago
A Knowledge Building Community Constructing a Knowledge Model Using Online Concept Maps
Knowledge models are structured representations of knowledge using symbols to represent pieces of knowledge and relationships between them, while a knowledge building community inv...
Moshe Leiba, Rafi Nachmias
ECSQARU
2001
Springer
14 years 1 months ago
Supporting Changes in Structure in Causal Model Construction
The term “changes in structure,” originating from work in econometrics, refers to structural modifications invoked by actions on a causal model. In this paper we formalize the...
Tsai-Ching Lu, Marek J. Druzdzel