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» Protein Model Representation and Construction
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RECOMB
2002
Springer
14 years 10 months ago
Probabilistic hierarchical clustering for biological data
Biological data, such as gene expression profiles or protein sequences, is often organized in a hierarchy of classes, where the instances assigned to "nearby" classes in...
Eran Segal, Daphne Koller
BMCBI
2005
292views more  BMCBI 2005»
13 years 9 months ago
Atlas - a data warehouse for integrative bioinformatics
Background: We present a biological data warehouse called Atlas that locally stores and integrates biological sequences, molecular interactions, homology information, functional a...
Sohrab P. Shah, Yong Huang, Tao Xu, Macaire M. S. ...
BMCBI
2004
158views more  BMCBI 2004»
13 years 9 months ago
Improvement of alignment accuracy utilizing sequentially conserved motifs
Background: Multiple sequence alignment algorithms are very important tools in molecular biology today. Accurate alignment of proteins is central to several areas such as homology...
Saikat Chakrabarti, Nitin Bhardwaj, Prem A. Anand,...
NAR
2011
290views Computer Vision» more  NAR 2011»
13 years 24 days ago
AHD2.0: an update version of Arabidopsis Hormone Database for plant systematic studies
Phytohormone studies enlightened our knowledge of plant responses to various changes. To provide a systematic and comprehensive view of genes participating in plant hormonal regul...
Zhiqiang Jiang, Xiao-Chuan Liu, Zhiyu Peng, Yinan ...
STOC
2001
ACM
115views Algorithms» more  STOC 2001»
14 years 10 months ago
Running time and program size for self-assembled squares
Recently Rothemund and Winfree 6] have considered the program size complexity of constructing squares by selfassembly. Here, we consider the time complexity of such constructions ...
Leonard M. Adleman, Qi Cheng, Ashish Goel, Ming-De...