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» Protein structure alignment using elastic shape analysis
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BMCBI
2007
140views more  BMCBI 2007»
13 years 8 months ago
Accurate prediction of protein secondary structure and solvent accessibility by consensus combiners of sequence and structure in
Background: Structural properties of proteins such as secondary structure and solvent accessibility contribute to three-dimensional structure prediction, not only in the ab initio...
Gianluca Pollastri, Alberto J. M. Martin, Catherin...
WABI
2005
Springer
120views Bioinformatics» more  WABI 2005»
14 years 2 months ago
Multiple Structural RNA Alignment with Lagrangian Relaxation
In contrast to proteins, many classes of functionally related RNA molecules show a rather weak sequence conservation but instead a fairly well conserved secondary structure. Hence ...
Markus Bauer, Gunnar W. Klau, Knut Reinert
ICPR
2008
IEEE
14 years 3 months ago
Kernel functions for robust 3D surface registration with spectral embeddings
Registration of 3D surfaces is a critical step for shape analysis. Recent studies show that spectral representations based on intrinsic pairwise geodesic distances between points ...
Xiuwen Liu, Arturo Donate, Matthew Jemison, Washin...
BMCBI
2008
138views more  BMCBI 2008»
13 years 8 months ago
Application of nonnegative matrix factorization to improve profile-profile alignment features for fold recognition and remote ho
Background: Nonnegative matrix factorization (NMF) is a feature extraction method that has the property of intuitive part-based representation of the original features. This uniqu...
Inkyung Jung, Jaehyung Lee, Soo-Young Lee, Dongsup...
BMCBI
2006
130views more  BMCBI 2006»
13 years 8 months ago
4SALE - A tool for synchronous RNA sequence and secondary structure alignment and editing
Background: In sequence analysis the multiple alignment builds the fundament of all proceeding analyses. Errors in an alignment could strongly influence all succeeding analyses an...
Philipp N. Seibel, Tobias Müller, Thomas Dand...