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BMCBI
2010
139views more  BMCBI 2010»
13 years 7 months ago
A global optimization algorithm for protein surface alignment
Background: A relevant problem in drug design is the comparison and recognition of protein binding sites. Binding sites recognition is generally based on geometry often combined w...
Paola Bertolazzi, Concettina Guerra, Giampaolo Liu...
NAR
2002
164views more  NAR 2002»
13 years 7 months ago
SCOP database in 2002: refinements accommodate structural genomics
The SCOP (Structural Classification of Proteins) database is a comprehensive ordering of all proteins of known structure, according to their evolutionary and structural relationsh...
Loredana Lo Conte, Steven E. Brenner, Tim J. P. Hu...
ICRA
2006
IEEE
99views Robotics» more  ICRA 2006»
14 years 1 months ago
Characterization of Protein based Spring-like Elastic Joints for Biorobotic Applications
—This paper presents a molecular mechanics study using a molecular dynamics software (NAMD) for characterization of molecular elastic joints for bio nanorobotic prototyping. Simp...
Mustapha Hamdi, Gaurav Sharma, Antoine Ferreira, C...
BMCBI
2008
117views more  BMCBI 2008»
13 years 7 months ago
A probabilistic framework to predict protein function from interaction data integrated with semantic knowledge
Background: The functional characterization of newly discovered proteins has been a challenge in the post-genomic era. Protein-protein interactions provide insights into the funct...
Young-Rae Cho, Lei Shi, Murali Ramanathan, Aidong ...
BMCBI
2008
121views more  BMCBI 2008»
13 years 7 months ago
A simple and fast heuristic for protein structure comparison
Background: Protein structure comparison is a key problem in bioinformatics. There exist several methods for doing protein comparison, being the solution of the Maximum Contact Ma...
David A. Pelta, Juan Ramón González,...