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GCB
2004
Springer
91views Biometrics» more  GCB 2004»
14 years 28 days ago
A Method for Fast Approximate Searching of Polypeptide Structures in the PDB
: The main contribution of this paper is a novel approach for fast searching in huge structural databases like the PDB. The data structure is based on an adaption of the generalize...
Hanjo Täubig, Arno Buchner, Jan Griebsch
BMCBI
2006
242views more  BMCBI 2006»
13 years 7 months ago
Predicting residue-wise contact orders in proteins by support vector regression
Background: The residue-wise contact order (RWCO) describes the sequence separations between the residues of interest and its contacting residues in a protein sequence. It is a ne...
Jiangning Song, Kevin Burrage
IM
2006
13 years 7 months ago
Using PageRank to Characterize Web Structure
Recent work on modeling the web graph has dwelt on capturing the degree distributions observed on the web. Pointing out that this represents a heavy reliance on "local" p...
Gopal Pandurangan, Prabhakar Raghavan, Eli Upfal
APBC
2004
166views Bioinformatics» more  APBC 2004»
13 years 9 months ago
THEMATICS is Effective for Active Site Prediction in Comparative Model Structures
THEMATICS (Theoretical Microscopic Titration Curves) is a simple, reliable computational predictor of the active sites of enzymes from structure. Our method, based on well-establi...
Ihsan A. Shehadi, Alper Uzun, Leonel F. Murga, Val...
NAR
2006
71views more  NAR 2006»
13 years 7 months ago
sgTarget: a target selection resource for structural genomics
sgTarget (http://www.ysbl.york.ac.uk/sgTarget) is a web-based resource to aid the selection and prioritization of candidate proteins for structure determination. The system annota...
Ana P. C. Rodrigues, Barry J. Grant, Roderick E. H...