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BIBE
2003
IEEE
183views Bioinformatics» more  BIBE 2003»
14 years 1 months ago
Effective Indexing and Filtering for Similarity Search in Large Biosequence Databases
We present a multi-dimensional indexing approach for fast sequence similarity search in DNA and protein databases. In particular, we propose effective transformations of subsequen...
Ozgur Ozturk, Hakan Ferhatosmanoglu
NAR
2011
189views Computer Vision» more  NAR 2011»
12 years 10 months ago
EDULISS: a small-molecule database with data-mining and pharmacophore searching capabilities
We present the relational database EDULISS (EDinburgh University Ligand Selection System), which stores structural, physicochemical and pharmacophoric properties of small molecule...
Kun-Yi Hsin, Hugh P. Morgan, Steven R. Shave, Andr...
BMCBI
2006
129views more  BMCBI 2006»
13 years 7 months ago
Fast index based algorithms and software for matching position specific scoring matrices
Background: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs in nucleotide as well as amino acid sequences....
Michael Beckstette, Robert Homann, Robert Giegeric...
DILS
2006
Springer
13 years 11 months ago
A Method for Similarity-Based Grouping of Biological Data
Similarity-based grouping of data entries in one or more data sources is a task underlying many different data management tasks, such as, structuring search results, removal of red...
Vaida Jakoniene, David Rundqvist, Patrick Lambrix
SIGMOD
2004
ACM
184views Database» more  SIGMOD 2004»
14 years 7 months ago
Identifying Similarities, Periodicities and Bursts for Online Search Queries
We present several methods for mining knowledge from the query logs of the MSN search engine. Using the query logs, we build a time series for each query word or phrase (e.g., `Th...
Michail Vlachos, Christopher Meek, Zografoula Vage...