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ICASSP
2007
IEEE
14 years 2 months ago
Fast Search of Sequences with Complex Symbol Correlations using Profile Context-Sensitive HMMS and Pre-Screening Filters
Recently, profile context-sensitive HMMs (profile-csHMMs) have been proposed which are very effective in modeling the common patterns and motifs in related symbol sequences. Pro...
Byung-Jun Yoon, P. P. Vaidyanathan
BMCBI
2008
103views more  BMCBI 2008»
13 years 8 months ago
TOPS++FATCAT: Fast flexible structural alignment using constraints derived from TOPS+ Strings Model
Background: Protein structure analysis and comparison are major challenges in structural bioinformatics. Despite the existence of many tools and algorithms, very few of them have ...
Mallika Veeramalai, Yuzhen Ye, Adam Godzik
BMEI
2008
IEEE
14 years 2 months ago
Comparison of ESI-MS Spectra in MassBank Database
Metabolomics is one of the most important topics in biology and medical science. In metabolomics, metabolites from biological samples are measured by mass spectrometry (MS) and th...
Hisayuki Horai, Masanori Arita, Takaaki Nishioka
IPPS
2003
IEEE
14 years 1 months ago
PROSIDIS: A Special Purpose Processor for PROtein SImilarity DIScovery
This work presents the architecture of PROSIDIS, a special purpose processor designed to search for the occurrence of substrings similar to a given ‘template string’ within a ...
Alessandro Marongiu, Paolo Palazzari, Vittorio Ros...
BMCBI
2006
178views more  BMCBI 2006»
13 years 7 months ago
MannDB - A microbial database of automated protein sequence analyses and evidence integration for protein characterization
Background: MannDB was created to meet a need for rapid, comprehensive automated protein sequence analyses to support selection of proteins suitable as targets for driving the dev...
Carol L. Ecale Zhou, Marisa Lam, Jason Smith, Adam...