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ALGORITHMICA
2010
106views more  ALGORITHMICA 2010»
13 years 8 months ago
Analysis of the Expected Number of Bit Comparisons Required by Quickselect
When algorithms for sorting and searching are applied to keys that are represented as bit strings, we can quantify the performance of the algorithms not only in terms of the numbe...
James Allen Fill, Takéhiko Nakama
BMCBI
2010
123views more  BMCBI 2010»
13 years 8 months ago
A new protein binding pocket similarity measure based on comparison of clouds of atoms in 3D: application to ligand prediction
Background: Predicting which molecules can bind to a given binding site of a protein with known 3D structure is important to decipher the protein function, and useful in drug desi...
Brice Hoffmann, Mikhail Zaslavskiy, Jean-Philippe ...
BMCBI
2010
131views more  BMCBI 2010»
13 years 8 months ago
Prediction of epigenetically regulated genes in breast cancer cell lines
Background: Methylation of CpG islands within the DNA promoter regions is one mechanism that leads to aberrant gene expression in cancer. In particular, the abnormal methylation o...
Leandro A. Loss, Anguraj Sadanandam, Steffen Durin...
BMCBI
2010
109views more  BMCBI 2010»
13 years 8 months ago
Functional characterization and topological modularity of molecular interaction networks
Background: Analyzing interaction networks for functional characterization poses significant challenges arising from the noisy, incomplete, and generic nature of both the interact...
Jayesh Pandey, Mehmet Koyutürk, Ananth Grama
BMCBI
2007
154views more  BMCBI 2007»
13 years 8 months ago
Cinteny: flexible analysis and visualization of synteny and genome rearrangements in multiple organisms
Background: Identifying syntenic regions, i.e., blocks of genes or other markers with evolutionary conserved order, and quantifying evolutionary relatedness between genomes in ter...
Amit U. Sinha, Jaroslaw Meller