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114
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BIB
2008
93views more  BIB 2008»
15 years 2 months ago
A structured approach for the engineering of biochemical network models, illustrated for signalling pathways
Quantitative models of biochemical networks (signal transduction cascades, metabolic pathways, gene regulatory circuits) are a central component of modern systems biology. Buildin...
Rainer Breitling, David Gilbert, Monika Heiner, Ri...
98
Voted
SIGSOFT
2002
ACM
16 years 2 months ago
Invariant inference for static checking
Static checking can verify the absence of errors in a program, but often requires written annotations or specifications. As a result, static checking can be difficult to use effec...
Jeremy W. Nimmer, Michael D. Ernst
135
Voted
CONCUR
2001
Springer
15 years 6 months ago
Bounded Reachability Checking with Process Semantics
Bounded model checking has been recently introduced as an efficient verification method for reactive systems. In this work we apply bounded model checking to asynchronous systems....
Keijo Heljanko
CMSB
2008
Springer
15 years 4 months ago
A Model Checking Approach to the Parameter Estimation of Biochemical Pathways
Model checking has historically been an important tool to verify models of a wide variety of systems. Typically a model has to exhibit certain properties to be classed `acceptable&...
Robin Donaldson, David Gilbert
122
Voted
CADE
2007
Springer
16 years 2 months ago
Towards Efficient Satisfiability Checking for Boolean Algebra with Presburger Arithmetic
Boolean Algebra with Presburger Arithmetic (BAPA) is a decidable logic that combines 1) Boolean algebra of sets of uninterpreted elements (BA) and 2) Presburger arithmetic (PA). BA...
Viktor Kuncak, Martin C. Rinard