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BMCBI
2010
161views more  BMCBI 2010»
13 years 7 months ago
GATExplorer: Genomic and Transcriptomic Explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs
Background: Genome-wide expression studies have developed exponentially in recent years as a result of extensive use of microarray technology. However, expression signals are typi...
Alberto Risueño, Celia Fontanillo, Marcel E...
CSR
2006
Springer
13 years 11 months ago
Fast Motif Search in Protein Sequence Databases
Regular expression pattern matching is widely used in computational biology. Searching through a database of sequences for a motif (a simple regular expression), or its variations...
Elena Zheleva, Abdullah N. Arslan
CORR
2011
Springer
143views Education» more  CORR 2011»
13 years 2 months ago
CoPhy: A Scalable, Portable, and Interactive Index Advisor for Large Workloads
Index tuning, i.e., selecting the indexes appropriate for a workload, is a crucial problem in database system tuning. In this paper, we solve index tuning for large problem instan...
Debabrata Dash, Neoklis Polyzotis, Anastasia Ailam...
DEXA
2006
Springer
151views Database» more  DEXA 2006»
13 years 9 months ago
An Incremental Refining Spatial Join Algorithm for Estimating Query Results in GIS
Geographic information systems (GIS) must support large georeferenced data sets. Due to the size of these data sets finding exact answers to spatial queries can be very time consum...
Wan D. Bae, Shayma Alkobaisi, Scott T. Leutenegger
BMCBI
2007
142views more  BMCBI 2007»
13 years 7 months ago
LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics
nd: A key abstraction in representing proteomics knowledge is the notion of unique identifiers for individual entities (e.g. proteins) and the massive graph of relationships among...
Andrew K. Smith, Kei-Hoi Cheung, Kevin Y. Yip, Mar...