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BMCBI
2006
128views more  BMCBI 2006»
13 years 8 months ago
Comparative assessment of performance and genome dependence among phylogenetic profiling methods
Background: The rapidly increasing speed with which genome sequence data can be generated will be accompanied by an exponential increase in the number of sequenced eukaryotes. Wit...
Evan S. Snitkin, Adam M. Gustafson, Joseph C. Mell...
ALENEX
2001
215views Algorithms» more  ALENEX 2001»
13 years 9 months ago
An Empirical Study of a New Approach to Nearest Neighbor Searching
In nearest neighbor searching we are given a set of n data points in real d-dimensional space, d , and the problem is to preprocess these points into a data structure, so that give...
Songrit Maneewongvatana, David M. Mount
SSDBM
2006
IEEE
163views Database» more  SSDBM 2006»
14 years 1 months ago
ACache: Using Caching to Improve the Performance of Multiple Sequence Alignments
Multiple sequence alignment represents a class of powerful bioinformatics tools with many uses in computational biology ranging from discovery of characteristic motifs and conserv...
Xun Tu, Kajal T. Claypool, Cindy X. Chen
ASPLOS
2006
ACM
13 years 11 months ago
Efficiently exploring architectural design spaces via predictive modeling
Architects use cycle-by-cycle simulation to evaluate design choices and understand tradeoffs and interactions among design parameters. Efficiently exploring exponential-size desig...
Engin Ipek, Sally A. McKee, Rich Caruana, Bronis R...
IJCAI
2003
13 years 9 months ago
Combining Classification and Transduction for Value Prediction in Speculative Plan Execution
Speculative execution of information gathering plans can dramatically reduce the effect of source I/O latencies on overall performance. However, the utility of speculation is clos...
Greg Barish, Craig A. Knoblock