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» R parallel - speeding up bioinformatics analysis with R
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CLUSTER
2003
IEEE
14 years 1 months ago
A Cluster-Based Solution for High Performance Hmmpfam Using EARTH Execution Model
Hmmpfam is a widely used computation-intensive bioinformatics software for sequence classification. The contribution of this paper is the first largely scalable and robust clust...
Weirong Zhu, Yanwei Niu, Jizhu Lu, Chuan Shen, Gua...
IPPS
2003
IEEE
14 years 1 months ago
Sequence Alignment on the Cray MTA-2
The standard algorithm for alignment of DNA sequences using dynamic programming has been implemented on the Cray MTA-2 (Multithreaded Architecture-2) at ENRI (Electronic Navigatio...
Shahid H. Bokhari, Jon R. Sauer
SIGMETRICS
2010
ACM
214views Hardware» more  SIGMETRICS 2010»
14 years 16 days ago
Distributed sensor network localization from local connectivity: performance analysis for the HOP-TERRAIN algorithm
This paper addresses the problem of determining the node locations in ad-hoc sensor networks when only connectivity information is available. In previous work, we showed that the ...
Amin Karbasi, Sewoong Oh
FPL
2005
Springer
172views Hardware» more  FPL 2005»
14 years 1 months ago
An FPGA Network Architecture for Accelerating 3DES - CBC
This paper presents a DES/3DES core that will support Cipher Block Chaining (CBC) and also has a built in keygen that together take up about 10% of the resources in a Xilinx Virte...
Chin Mun Wee, Peter R. Sutton, Neil W. Bergmann
TPDS
1998
114views more  TPDS 1998»
13 years 7 months ago
On the Automatic Parallelization of the Perfect Benchmarks
We present a set of advanced program parallelization techniques that are able to signi cantly improve the performance of application programs. We present evidence for this improve...
Rudolf Eigenmann, Jay Hoeflinger, David A. Padua