Sciweavers

386 search results - page 19 / 78
» R parallel - speeding up bioinformatics analysis with R
Sort
View
BIOINFORMATICS
2010
94views more  BIOINFORMATICS 2010»
13 years 7 months ago
Globally, unrelated protein sequences appear random
Motivation: To test whether protein folding constraints and secondary structure sequence preferences significantly reduce the space of amino acid words in proteins, we compared th...
Daniel T. Lavelle, William R. Pearson
IPPS
2007
IEEE
14 years 2 months ago
On the Path to Enable Multi-scale Biomolecular Simulations on PetaFLOPS Supercomputer with Multi-core Processors
1 Biological processes occurring inside cell involve multiple scales of time and length; many popular theoretical and computational multi-scale techniques utilize biomolecular simu...
Sadaf R. Alam, Pratul K. Agarwal
PDIS
1994
IEEE
13 years 12 months ago
Exposing I/O Concurrency with Informed Prefetching
Informed prefetching provides a simple mechanism for I/O-intensive, cache-ineffective applications to efficiently exploit highly-parallel I/O subsystems such as disk arrays. This ...
R. Hugo Patterson, Garth A. Gibson
TC
2010
13 years 6 months ago
Scalable Node-Level Computation Kernels for Parallel Exact Inference
—In this paper, we investigate data parallelism in exact inference with respect to arbitrary junction trees. Exact inference is a key problem in exploring probabilistic graphical...
Yinglong Xia, Viktor K. Prasanna
CSB
2003
IEEE
14 years 1 months ago
Group Testing With DNA Chips: Generating Designs and Decoding Experiments
DNA microarrays are a valuable tool for massively parallel DNA-DNA hybridization experiments. Currently, most applications rely on the existence of sequence-specific oligonucleot...
Alexander Schliep, David C. Torney, Sven Rahmann