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BMCBI
2006
137views more  BMCBI 2006»
13 years 7 months ago
A classification-based framework for predicting and analyzing gene regulatory response
Background: We have recently introduced a predictive framework for studying gene transcriptional regulation in simpler organisms using a novel supervised learning algorithm called...
Anshul Kundaje, Manuel Middendorf, Mihir Shah, Chr...
WWW
2009
ACM
14 years 8 months ago
Automated construction of web accessibility models from transaction click-streams
Screen readers, the dominant assistive technology used by visually impaired people to access the Web, function by speaking out the content of the screen serially. Using screen rea...
Jalal Mahmud, Yevgen Borodin, I. V. Ramakrishnan, ...
SIGMOD
2008
ACM
215views Database» more  SIGMOD 2008»
14 years 7 months ago
CSV: visualizing and mining cohesive subgraphs
Extracting dense sub-components from graphs efficiently is an important objective in a wide range of application domains ranging from social network analysis to biological network...
Nan Wang, Srinivasan Parthasarathy, Kian-Lee Tan, ...
ICCAD
1997
IEEE
112views Hardware» more  ICCAD 1997»
13 years 12 months ago
Circuit optimization via adjoint Lagrangians
The circuit tuning problem is best approached by means of gradient-based nonlinear optimization algorithms. For large circuits, gradient computation can be the bottleneck in the o...
Andrew R. Conn, Ruud A. Haring, Chandramouli Viswe...
BMCBI
2010
144views more  BMCBI 2010»
13 years 7 months ago
Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data
Background: The investigation of plant genome structure and evolution requires comprehensive characterization of repetitive sequences that make up the majority of higher plant nuc...
Petr Novák, Pavel Neumann, Jirí Maca...