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» RNA Pseudoknot Prediction Using Term Rewriting
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ALMOB
2008
124views more  ALMOB 2008»
13 years 10 months ago
A scoring matrix approach to detecting miRNA target sites
Background: Experimental identification of microRNA (miRNA) targets is a difficult and time consuming process. As a consequence several computational prediction methods have been ...
Simon Moxon, Vincent Moulton, Jan T. Kim
BMCBI
2010
108views more  BMCBI 2010»
13 years 7 months ago
Prediction of RNA secondary structure by maximizing pseudo-expected accuracy
Background: Recent studies have revealed the importance of considering the entire distribution of possible secondary structures in RNA secondary structure predictions; therefore, ...
Michiaki Hamada, Kengo Sato, Kiyoshi Asai
ENTCS
2008
85views more  ENTCS 2008»
13 years 10 months ago
Innermost Termination of Rewrite Systems by Labeling
Semantic labeling is a powerful transformation technique for proving termination of term rewrite systems. The semantic part is given by a model or a quasi-model of the rewrite rul...
René Thiemann, Aart Middeldorp
BMCBI
2008
109views more  BMCBI 2008»
13 years 10 months ago
ConStruct: Improved construction of RNA consensus structures
Background: Aligning homologous non-coding RNAs (ncRNAs) correctly in terms of sequence and structure is an unresolved problem, due to both mathematical complexity and imperfect s...
Andreas Wilm, Kornelia Linnenbrink, Gerhard Steger
EVOW
2007
Springer
14 years 1 months ago
Dinucleotide Step Parameterization of Pre-miRNAs Using Multi-objective Evolutionary Algorithms
MicroRNAs (miRNAs) form a large functional family of small noncoding RNAs and play an important role as posttranscriptional regulators, by repressing the translation of mRNAs. Rece...
Jin-Wu Nam, In-Hee Lee, Kyu Baek Hwang, Seong-Bae ...