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BMCBI
2010
109views more  BMCBI 2010»
13 years 8 months ago
FPGA acceleration of the phylogenetic likelihood function for Bayesian MCMC inference methods
Background: Likelihood (ML)-based phylogenetic inference has become a popular method for estimating the evolutionary relationships among species based on genomic sequence data. Th...
Stephanie Zierke, Jason D. Bakos
DATE
2008
IEEE
182views Hardware» more  DATE 2008»
14 years 3 months ago
An adaptable FPGA-based System for Regular Expression Matching
In many applications string pattern matching is one of the most intensive tasks in terms of computation time and memory accesses. Network Intrusion Detection Systems and DNA Seque...
Ivano Bonesana, Marco Paolieri, Marco D. Santambro...
EDOC
2007
IEEE
14 years 2 months ago
Model-Driven Engineering for Requirements Analysis
Requirements engineering (RE) encompasses a set of activities for eliciting, modelling, agreeing, communicating and validating requirements that precisely define the problem doma...
Benoit Baudry, Clémentine Nebut, Yves Le Tr...
EMNLP
2009
13 years 6 months ago
Web-Scale Distributional Similarity and Entity Set Expansion
Computing the pairwise semantic similarity between all words on the Web is a computationally challenging task. Parallelization and optimizations are necessary. We propose a highly...
Patrick Pantel, Eric Crestan, Arkady Borkovsky, An...
COORDINATION
2009
Springer
14 years 9 months ago
Assume-Guarantee Verification of Concurrent Systems
Process algebras are a set of mathematically rigourous languages with well defined semantics that permit modelling behaviour of concurrent and communicating systems. Verification o...
Liliana D'Errico, Michele Loreti