143 search results - page 5 / 29 » Random preorders and alignments |
RECOMB
2006
Springer
14 years 7 months ago
2006
Springer
In this paper, we present CONTRAlign, an extensible and fully automatic framework for parameter learning and protein pairwise sequence alignment using pair conditional random field...
RECOMB
2006
Springer
14 years 7 months ago
2006
Springer
It is well known that the base composition along eukaryotic genomes is long-range correlated. Here, we investigate the effect of such long-range correlations on alignment score sta...
ENTCS
1998
13 years 7 months ago
1998
We consider a generalisation of Larsen and Skou’s [19] reactive probabilistic transition systems which exhibit three kinds of choice: action-guarded probabilistic choice, extern...
BIBM
2007
IEEE
14 years 1 months ago
2007
IEEE
In this paper, we present an algorithm to simultaneously align three biological sequences with affine gap model and infer their common ancestral sequence. Our algorithm can be fu...
BMCBI
2005
13 years 7 months ago
2005
Background: We present a complete re-implementation of the segment-based approach to multiple protein alignment that contains a number of improvements compared to the previous ver...