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» Reconfigurable Molecular Dynamics Simulator
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ICCS
2001
Springer
14 years 3 months ago
Supporting Car-Parrinello Molecular Dynamics with UNICORE
This paper presents the integration of application specific interfaces in the UNICORE Grid infrastructure. UNICORE provides a seamless and secure mechanism to access distributed s...
Valentina Huber
SCI
1999
Springer
14 years 3 months ago
Shared Memory Parallelization of the GROMOS96 Molecular Dynamics Code
This paper describes the parallelization of a commercial molecular dynamics simulation code, GROMOS96, on a SCI (Scalable Coherent Interface) interconnected PC cluster. The underly...
Marcus Dormanns
ICCS
2007
Springer
14 years 5 months ago
A General Long-Time Molecular Dynamics Scheme in Atomistic Systems: Hyperdynamics in Entropy Dominated Systems
Abstract. We extend the hyperdynamics method developed for lowdimensional energy-dominated systems, to simulate slow dynamics in more general atomistic systems. We show that a few ...
Xin Zhou, Yi Jiang
VIS
2007
IEEE
169views Visualization» more  VIS 2007»
15 years 7 days ago
Visual Verification and Analysis of Cluster Detection for Molecular Dynamics
A current research topic in molecular thermodynamics is the condensation of vapor to liquid and the investigation of this process at the molecular level. Condensation is found in m...
Sebastian Grottel, Guido Reina, Jadran Vrabec, ...
WABI
2005
Springer
14 years 4 months ago
Improved Maintenance of Molecular Surfaces Using Dynamic Graph Connectivity
We present recent developments in efficiently maintaining the boundary and surface area of protein molecules as they undergo conformational changes. As the method that we devised k...
Eran Eyal, Dan Halperin