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» Reconfigurable Molecular Dynamics Simulator
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ISBI
2006
IEEE
14 years 10 months ago
Bayesian tracking for fluorescence microscopic imaging
Fluorescence microscopy is a powerful imaging tool for studying molecular dynamics in living cells. For quantitative motion analysis of subcellular structures robust and accurate ...
Ihor Smal, Wiro J. Niessen, Erik H. W. Meijering
MMAS
2010
Springer
13 years 4 months ago
Simplified Modelling of a Thermal Bath, with Application to a Fluid Vortex System
Based on the thermodynamic concept of a reservoir, we investigate a computational model for interaction with unresolved degrees of freedom (a thermal bath). We assume that a finite...
Svetlana Dubinkina, Jason Frank, Ben Leimkuhler
DCOSS
2010
Springer
14 years 1 months ago
Data Spider: A Resilient Mobile Basestation Protocol for Efficient Data Collection in Wireless Sensor Networks
Traditional deployments of wireless sensor networks (WSNs) rely on static basestations to collect data. For applications with highly spatio-temporal and dynamic data generation, su...
Onur Soysal, Murat Demirbas
RECOMB
2007
Springer
14 years 10 months ago
Free Energy Estimates of All-Atom Protein Structures Using Generalized Belief Propagation
We present a technique for approximating the free energy of protein structures using Generalized Belief Propagation (GBP). The accuracy and utility of these estimates are then demo...
Hetunandan Kamisetty, Eric P. Xing, Christopher Ja...
BICOB
2010
Springer
14 years 2 months ago
Folding-aware and Structure-conscious 3D Substructures in Folding Data: Identification and Applications
Molecular dynamics simulations have been employed by biologists to study the protein folding problem. Such simulations have resulted in a large number of protein folding trajector...
Hui Yang, Saurabh Gupte, Runtang Wang, Rahul Parte