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» Reconstructing Metabolic Networks Using Interval Analysis
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JELIA
2004
Springer
14 years 27 days ago
Towards a Logical Analysis of Biochemical Pathways
Biochemical pathways or networks are generic representations used to model many different types of complex functional and physical interactions in biological systems. Models based ...
Patrick Doherty, Steve Kertes, Martin Magnusson, A...
CIBCB
2007
IEEE
13 years 9 months ago
Optimization of Bacterial Strains with Variable-Sized Evolutionary Algorithms
—In metabolic engineering it is difficult to identify which set of genetic manipulations will result in a microbial strain that achieves a desired production goal, due to the co...
Miguel Rocha, José P. Pinto, Isabel Rocha, ...
ATVA
2004
Springer
146views Hardware» more  ATVA 2004»
14 years 28 days ago
A Global Timed Bisimulation Preserving Abstraction for Parametric Time-Interval Automata
Timed Bisimulation Preserving Abstraction for Parametric Time-Interval Automata Akio Nakata, Tadaaki Tanimoto, Suguru Sasaki, Teruo Higashino Department of Information Networking, ...
Tadaaki Tanimoto, Suguru Sasaki, Akio Nakata, Teru...
JIB
2008
87views more  JIB 2008»
13 years 7 months ago
2.5D Visualisation of Overlapping Biological Networks
Biological data is often structured in the form of complex interconnected networks such as protein interaction and metabolic networks. In this paper, we investigate a new problem ...
David Cho Yau Fung, Seok-Hee Hong, Dirk Koschü...
BMCBI
2004
150views more  BMCBI 2004»
13 years 7 months ago
Graph-based iterative Group Analysis enhances microarray interpretation
Background: One of the most time-consuming tasks after performing a gene expression experiment is the biological interpretation of the results by identifying physiologically impor...
Rainer Breitling, Anna Amtmann, Pawel Herzyk