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» Reconstructing Metabolic Networks Using Interval Analysis
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TIP
2008
113views more  TIP 2008»
13 years 7 months ago
Phase Local Approximation (PhaseLa) Technique for Phase Unwrap From Noisy Data
The local polynomial approximation (LPA) is a nonparametric regression technique with pointwise estimation in a sliding window. We apply the LPA of the argument of cos and sin in o...
Vladimir Katkovnik, Jaakko Astola, Karen O. Egiaza...
KDD
2008
ACM
121views Data Mining» more  KDD 2008»
14 years 8 months ago
Reconstructing chemical reaction networks: data mining meets system identification
We present an approach to reconstructing chemical reaction networks from time series measurements of the concentrations of the molecules involved. Our solution strategy combines t...
Yong Ju Cho, Naren Ramakrishnan, Yang Cao
APN
2006
Springer
13 years 9 months ago
From Petri Nets to Differential Equations - An Integrative Approach for Biochemical Network Analysis
Abstract. We report on the results of an investigation into the integration of Petri nets and ordinary differential equations (ODEs) for the modelling and analysis of biochemical n...
David Gilbert, Monika Heiner
RECOMB
2004
Springer
14 years 7 months ago
Modeling and Analysis of Heterogeneous Regulation in Biological Networks
Abstract. In this study we propose a novel model for the representation of biological networks and provide algorithms for learning model parameters from experimental data. Our appr...
Irit Gat-Viks, Amos Tanay, Ron Shamir
BMCBI
2010
100views more  BMCBI 2010»
13 years 7 months ago
Trimming of mammalian transcriptional networks using network component analysis
Background: Network Component Analysis (NCA) has been used to deduce the activities of transcription factors (TFs) from gene expression data and the TF-gene binding relationship. ...
Linh M. Tran, Daniel R. Hyduke, James C. Liao