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» Reconstructing the Topology of Protein Complexes
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BMCBI
2008
146views more  BMCBI 2008»
13 years 7 months ago
Rank-based edge reconstruction for scale-free genetic regulatory networks
Background: The reconstruction of genetic regulatory networks from microarray gene expression data has been a challenging task in bioinformatics. Various approaches to this proble...
Guanrao Chen, Peter Larsen, Eyad Almasri, Yang Dai
CDC
2008
IEEE
110views Control Systems» more  CDC 2008»
13 years 9 months ago
Topological identification in networks of dynamical systems
The paper deals with the problem of reconstructing the tree-like topological structure of a network of linear dynamical systems. A distance function is defined in order to evaluat...
Donatello Materassi, Giacomo Innocenti
BMCBI
2011
13 years 2 months ago
Analysis on the reconstruction accuracy of the Fitch method for inferring ancestral states
Background: As one of the most widely used parsimony methods for ancestral reconstruction, the Fitch method minimizes the total number of hypothetical substitutions along all bran...
Jialiang Yang, Jun Li, Liuhuan Dong, Stefan Gr&uum...
BMCBI
2005
97views more  BMCBI 2005»
13 years 7 months ago
The yeast kinome displays scale free topology with functional hub clusters
Background: The availability of interaction databases provides an opportunity for researchers to utilize immense amounts of data exclusively in silico. Recently there has been an ...
Robin E. C. Lee, Lynn A. Megeney
TCBB
2010
144views more  TCBB 2010»
13 years 2 months ago
Querying Graphs in Protein-Protein Interactions Networks Using Feedback Vertex Set
Recent techniques increase rapidly the amount of our knowledge on interactions between proteins. The interpretation of these new information depends on our ability to retrieve kno...
Guillaume Blin, Florian Sikora, Stéphane Vi...