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BMCBI
2007
233views more  BMCBI 2007»
13 years 7 months ago
160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA)
Background: To infer homology and subsequently gene function, the Smith-Waterman (SW) algorithm is used to find the optimal local alignment between two sequences. When searching s...
Isaac T. S. Li, Warren Shum, Kevin Truong
PLDI
2012
ACM
11 years 10 months ago
JANUS: exploiting parallelism via hindsight
This paper addresses the problem of reducing unnecessary conflicts in optimistic synchronization. Optimistic synchronization must ensure that any two concurrently executing trans...
Omer Tripp, Roman Manevich, John Field, Mooly Sagi...
ENTCS
2002
91views more  ENTCS 2002»
13 years 7 months ago
Interval Duration Logic: Expressiveness and Decidability
We investigate a variant of dense-time Duration Calculus which permits model checking using timed/hybrid automata. We define a variant of the Duration Calculus, called Interval Du...
Paritosh K. Pandya
FM
2009
Springer
146views Formal Methods» more  FM 2009»
13 years 5 months ago
Verifying Real-Time Systems against Scenario-Based Requirements
Abstract. We propose an approach to automatic verification of realtime systems against scenario-based requirements. A real-time system is modeled as a network of Timed Automata (TA...
Kim Guldstrand Larsen, Shuhao Li, Brian Nielsen, S...
COCO
1998
Springer
100views Algorithms» more  COCO 1998»
13 years 11 months ago
Uniformly Hard Languages
Ladner [18] showed that there are no minimal recursive sets under polynomial-time reductions. Given any recursive set A, Ladner constructs a set B such that B strictly reduces to ...
Rodney G. Downey, Lance Fortnow