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ASPLOS
2011
ACM
12 years 11 months ago
Hardware acceleration of transactional memory on commodity systems
The adoption of transactional memory is hindered by the high overhead of software transactional memory and the intrusive design changes required by previously proposed TM hardware...
Jared Casper, Tayo Oguntebi, Sungpack Hong, Nathan...
ASPLOS
2011
ACM
12 years 11 months ago
MemScale: active low-power modes for main memory
Main memory is responsible for a large and increasing fraction of the energy consumed by servers. Prior work has focused on exploiting DRAM low-power states to conserve energy. Ho...
Qingyuan Deng, David Meisner, Luiz E. Ramos, Thoma...
BIOINFORMATICS
2011
12 years 11 months ago
RINQ: Reference-based Indexing for Network Queries
We consider the problem of similarity queries in biological network databases. Given a database of networks, similarity query returns all the database networks whose similarity (i...
Günhan Gülsoy, Tamer Kahveci
BMCBI
2011
12 years 11 months ago
A hierarchical Bayesian network approach for linkage disequilibrium modeling and data-dimensionality reduction prior to genome-w
Background: Discovering the genetic basis of common genetic diseases in the human genome represents a public health issue. However, the dimensionality of the genetic data (up to 1...
Raphael Mourad, Christine Sinoquet, Philippe Leray
BMCBI
2011
12 years 11 months ago
Efficient alignment of pyrosequencing reads for re-sequencing applications
Background: Over the past few years, new massively parallel DNA sequencing technologies have emerged. These platforms generate massive amounts of data per run, greatly reducing th...
Francisco Fernandes, Paulo G. S. da Fonseca, Lu&ia...