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BMCBI
2011
12 years 11 months ago
Software comparison for evaluating genomic copy number variation for Affymetrix 6.0 SNP array platform
Background: Copy number data are routinely being extracted from genome-wide association study chips using a variety of software. We empirically evaluated and compared four freely-...
Jeanette E. Eckel-Passow, Elizabeth J. Atkinson, S...
ISCA
2010
IEEE
305views Hardware» more  ISCA 2010»
14 years 17 days ago
Rethinking DRAM design and organization for energy-constrained multi-cores
DRAM vendors have traditionally optimized the cost-perbit metric, often making design decisions that incur energy penalties. A prime example is the overfetch feature in DRAM, wher...
Aniruddha N. Udipi, Naveen Muralimanohar, Niladris...
TCBB
2008
113views more  TCBB 2008»
13 years 7 months ago
Efficient Algorithms for the Computational Design of Optimal Tiling Arrays
The representation of a genome by oligonucleotide probes is a prerequisite for the analysis of many of its basic properties, such as transcription factor binding sites, chromosomal...
Alexander Schliep, Roland Krause
ISBRA
2009
Springer
14 years 2 months ago
A Linear-Time Algorithm for Analyzing Array CGH Data Using Log Ratio Triangulation
Abstract. DNA copy number is the number of replicates of a contiguous segment of DNA on the genome. Copy number alteration (CNA) is a genetic abnormality in which the number of the...
Matthew Hayes, Jing Li
ICCV
2003
IEEE
14 years 23 days ago
Unsupervised Non-parametric Region Segmentation Using Level Sets
We present a novel non-parametric unsupervised segmentation algorithm based on Region Competition [21]; but implemented within a Level Sets framework [11]. The key novelty of the ...
Timor Kadir, Michael Brady