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BMCBI
2005
116views more  BMCBI 2005»
15 years 2 months ago
SuperLigands - a database of ligand structures derived from the Protein Data Bank
Background: Currently, the PDB contains approximately 29,000 protein structures comprising over 70,000 experimentally determined three-dimensional structures of over 5,000 differe...
Elke Michalsky, Mathias Dunkel, Andrean Goede, Rob...
BMCBI
2002
137views more  BMCBI 2002»
15 years 2 months ago
ORFer - retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files
Background: Functional genomics involves the parallel experimentation with large sets of proteins. This requires management of large sets of open reading frames as a prerequisite ...
Konrad Büssow, Steve Hoffmann, Volker Sievert
NAR
2000
104views more  NAR 2000»
15 years 2 months ago
Transterm: a database of messenger RNA components and signals
Transterm facilitates studies of messenger RNAs and translational control signals. Each messenger RNA (mRNA) from GenBank is extracted and broken into its functional components, i...
Grant H. Jacobs, Peter A. Stockwell, Mark J. Schre...
BMCBI
2008
128views more  BMCBI 2008»
15 years 2 months ago
In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): comparison of the automated ESTExplorer
Background: The analysis of expressed sequence tags (EST) offers a rapid and cost effective approach to elucidate the transcriptome of an organism, but requires several computatio...
Shivashankar H. Nagaraj, Robin B. Gasser, Alasdair...
PVLDB
2008
167views more  PVLDB 2008»
15 years 2 months ago
Managing and querying transaction-time databases under schema evolution
The old problem of managing the history of database information is now made more urgent and complex by fast spreading web information systems, such as Wikipedia. Our PRIMA system ...
Hyun Jin Moon, Carlo Curino, Alin Deutsch, Chien-Y...