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ISBI
2009
IEEE
14 years 2 months ago
Tunable Tensor Voting for Regularizing Punctate Patterns of Membrane-Bound Protein Signals
Membrane-bound protein, expressed in the basal-lateral region, is heterogeneous and an important endpoint for understanding biological processes. At the optical resolution, membra...
Leandro A. Loss, George Bebis, Bahram Parvin
DKE
2007
101views more  DKE 2007»
13 years 7 months ago
Parameterized pattern queries
We introduce parameterized pattern queries as a new paradigm to extend traditional pattern expressions over sequence databases. A parameterized pattern is essentially a string mad...
Cédric du Mouza, Philippe Rigaux, Michel Sc...
INFOCOM
2011
IEEE
12 years 11 months ago
Space-time tradeoff in regular expression matching with semi-deterministic finite automata
Abstract—Regular expression matching (REM) with nondeterministic finite automata (NFA) can be computationally expensive when a large number of patterns are matched concurrently....
Yi-Hua E. Yang, Viktor K. Prasanna
CSR
2006
Springer
13 years 11 months ago
Fast Motif Search in Protein Sequence Databases
Regular expression pattern matching is widely used in computational biology. Searching through a database of sequences for a motif (a simple regular expression), or its variations...
Elena Zheleva, Abdullah N. Arslan
IISWC
2008
IEEE
14 years 1 months ago
A workload for evaluating deep packet inspection architectures
—High-speed content inspection of network traffic is an important new application area for programmable networking systems, and has recently led to several proposals for high-per...
Michela Becchi, Mark A. Franklin, Patrick Crowley