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» Remarks on the Schoof-Elkies-Atkin algorithm
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BMCBI
2006
112views more  BMCBI 2006»
13 years 10 months ago
Algorithms for incorporating prior topological information in HMMs: application to transmembrane proteins
Background: Hidden Markov Models (HMMs) have been extensively used in computational molecular biology, for modelling protein and nucleic acid sequences. In many applications, such...
Pantelis G. Bagos, Theodore D. Liakopoulos, Stavro...
BMCBI
2010
135views more  BMCBI 2010»
13 years 10 months ago
GIGA: a simple, efficient algorithm for gene tree inference in the genomic age
Background: Phylogenetic relationships between genes are not only of theoretical interest: they enable us to learn about human genes through the experimental work on their relativ...
Paul D. Thomas
COR
2006
138views more  COR 2006»
13 years 9 months ago
Deconstructing Nowicki and Smutnicki's i-TSAB tabu search algorithm for the job-shop scheduling problem
Over the last decade and a half, tabu search algorithms for machine scheduling have gained a near-mythical reputation by consistently equaling or establishing state-of-the-art per...
Jean-Paul Watson, Adele E. Howe, L. Darrell Whitle...
BMCBI
2007
116views more  BMCBI 2007»
13 years 9 months ago
MED: a new non-supervised gene prediction algorithm for bacterial and archaeal genomes
Background: Despite a remarkable success in the computational prediction of genes in Bacteria and Archaea, a lack of comprehensive understanding of prokaryotic gene structures pre...
Huaiqiu Zhu, Gang-Qing Hu, Yi-Fan Yang, Jin Wang, ...
GLVLSI
1998
IEEE
129views VLSI» more  GLVLSI 1998»
14 years 2 months ago
Tabu Search Based Circuit Optimization
In this paper we address the problem of optimizing mixed CMOS BiCMOS circuits. The problem is formulated as a constrained combinatorial optimization problem and solved using an ta...
Sadiq M. Sait, Habib Youssef, Munir M. Zahra