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BMCBI
2006
143views more  BMCBI 2006»
13 years 8 months ago
IsoSVM - Distinguishing isoforms and paralogs on the protein level
Background: Recent progress in cDNA and EST sequencing is yielding a deluge of sequence data. Like database search results and proteome databases, this data gives rise to inferred...
Michael Spitzer, Stefan Lorkowski, Paul Cullen, Al...
BMCBI
2006
111views more  BMCBI 2006»
13 years 8 months ago
Using ESTs to improve the accuracy of de novo gene prediction
Background: ESTs are a tremendous resource for determining the exon-intron structures of genes, but even extensive EST sequencing tends to leave many exons and genes untouched. Ge...
Chaochun Wei, Michael R. Brent
SMA
2008
ACM
149views Solid Modeling» more  SMA 2008»
13 years 8 months ago
Exact arrangements on tori and Dupin cyclides
An algorithm and implementation is presented to compute the exact arrangement induced by arbitrary algebraic surfaces on a parametrized ring Dupin cyclide. The family of Dupin cyc...
Eric Berberich, Michael Kerber
SP
2008
IEEE
138views Security Privacy» more  SP 2008»
13 years 8 months ago
A performance tuning methodology with compiler support
We have developed an environment, based upon robust, existing, open source software, for tuning applications written using MPI, OpenMP or both. The goal of this effort, which inte...
Oscar Hernandez, Barbara M. Chapman, Haoqiang Jin
TCAD
2008
114views more  TCAD 2008»
13 years 8 months ago
Three-Dimensional Chip-Multiprocessor Run-Time Thermal Management
Three-dimensional integration has the potential to improve the communication latency and integration density of chip-level multiprocessors (CMPs). However, the stacked highpower de...
Changyun Zhu, Zhenyu (Peter) Gu, Li Shang, Robert ...