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» Representations of Metabolic Knowledge: Pathways
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ICDM
2006
IEEE
152views Data Mining» more  ICDM 2006»
14 years 19 days ago
Application of Graph-based Data Mining to Metabolic Pathways
We present a method for finding biologically meaningful patterns on metabolic pathways using the SUBDUE graph-based relational learning system. A huge amount of biological data t...
Chang Hun You, Lawrence B. Holder, Diane J. Cook
ISMB
1993
13 years 8 months ago
Representations of Metabolic Knowledge
Construction of electronic repositories of metabolic information is an increasingly active area of research. Encoding detailed knowledge of a complex biological domain requires ...
Peter D. Karp, Monica Riley
IV
2008
IEEE
296views Visualization» more  IV 2008»
14 years 29 days ago
Revealing Subnetwork Roles using Contextual Visualization: Comparison of Metabolic Networks
This article is addressing a recurrent problem in biology: mining newly built large scale networks. Our approach consists in comparing these new networks to well known ones. The v...
Romain Bourqui, Fabien Jourdan
BMCBI
2006
127views more  BMCBI 2006»
13 years 6 months ago
Construction of phylogenetic trees by kernel-based comparative analysis of metabolic networks
Background: To infer the tree of life requires knowledge of the common characteristics of each species descended from a common ancestor as the measuring criteria and a method to c...
Sok June Oh, Je-Gun Joung, Jeong Ho Chang, Byoung-...
BIRD
2008
Springer
158views Bioinformatics» more  BIRD 2008»
13 years 8 months ago
A Computational Method for Reconstructing Gapless Metabolic Networks
Abstract. We propose a computational method for reconstructing metabolic networks. The method utilizes optimization techniques and graph traversal algorithms to discover a set of b...
Esa Pitkänen, Ari Rantanen, Juho Rousu, Esko ...