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» Representations of Metabolic Knowledge: Pathways
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OWLED
2008
13 years 8 months ago
Situational Modeling: Defining Molecular Roles in Biochemical Pathways and Reactions
Central to a coherent understanding of cellular biology is a faithful representation of biochemical processes as it pertains to its molecular participants. Current representations ...
Michel Dumontier
NAR
2008
103views more  NAR 2008»
13 years 6 months ago
STITCH: interaction networks of chemicals and proteins
The knowledge about interactions between proteins and small molecules is essential for the understanding of molecular and cellular functions. However, information on such interact...
Michael Kuhn 0004, Christian von Mering, Monica Ca...
AIME
2009
Springer
13 years 7 months ago
Semantic Web-Based Modeling of Clinical Pathways Using the UML Activity Diagrams and OWL-S
: Clinical Pathways can be viewed as workflows, comprising an ordering of activities with associated execution constraints. Workflow models allow formal representation, analysis an...
Ali Daniyal, Syed Sibte Raza Abidi
RECOMB
2004
Springer
14 years 7 months ago
Modeling and Analysis of Heterogeneous Regulation in Biological Networks
Abstract. In this study we propose a novel model for the representation of biological networks and provide algorithms for learning model parameters from experimental data. Our appr...
Irit Gat-Viks, Amos Tanay, Ron Shamir
BMCBI
2006
166views more  BMCBI 2006»
13 years 6 months ago
Extraction of phylogenetic network modules from the metabolic network
Background: In bio-systems, genes, proteins and compounds are related to each other, thus forming complex networks. Although each organism has its individual network, some organis...
Takuji Yamada, Minoru Kanehisa, Susumu Goto