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» Representations of Metabolic Knowledge
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KI
2008
Springer
13 years 10 months ago
UML Representation Proposal for XTT Rule Design Method
In the paper practical issues concerning the use of UML as a knowledge representation method for rules are discussed. A proposal of an UML-based representation for the XTT structur...
Grzegorz J. Nalepa, Krzysztof Kluza
BMCBI
2006
172views more  BMCBI 2006»
13 years 10 months ago
BioWarehouse: a bioinformatics database warehouse toolkit
Background: This article addresses the problem of interoperation of heterogeneous bioinformatics databases. Results: We introduce BioWarehouse, an open source toolkit for construc...
Thomas J. Lee, Yannick Pouliot, Valerie Wagner, Pr...
ASWC
2009
Springer
14 years 4 months ago
A Conceptual Model for a Web-Scale Entity Name System
The problem of identity and reference is receiving increasing attention in the (semantic) web community and is emerging as one of the key features which distinguish traditional kno...
Paolo Bouquet, Themis Palpanas, Heiko Stoermer, Ma...
BMCBI
2004
189views more  BMCBI 2004»
13 years 10 months ago
B.E.A.R. GeneInfo: A tool for identifying gene-related biomedical publications through user modifiable queries
Background: Once specific genes are identified through high throughput genomics technologies there is a need to sort the final gene list to a manageable size for validation studie...
Guohui Zhou, Xinyu Wen, Hang Liu, Michael J. Schli...
BMCBI
2010
154views more  BMCBI 2010»
13 years 7 months ago
Knowledge-based matrix factorization temporally resolves the cellular responses to IL-6 stimulation
Background: External stimulations of cells by hormones, cytokines or growth factors activate signal transduction pathways that subsequently induce a re-arrangement of cellular gen...
Andreas Kowarsch, Florian Blöchl, Sebastian B...