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    BMCBI
    2010
    155views more  BMCBI 2010»
    A flexible R package for nonnegative matrix factorization
    13 years 8 months ago
    A flexible R package for nonnegative matrix factorization
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    Background: Nonnegative Matrix Factorization (NMF) is an unsupervised learning technique that has been applied successfully in several fields, including signal processing, face re...
    Renaud Gaujoux, Cathal Seoighe
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    BMCBI
    2008
    113views more  BMCBI 2008»
    SNPFile - A software library and file format for large scale association mapping and population genetics studies
    13 years 8 months ago
    SNPFile - A software library and file format for large scale association mapping and population genetics studies
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    Background: High-throughput genotyping technology has enabled cost effective typing of thousands of individuals in hundred of thousands of markers for use in genome wide studies. ...
    Jesper Nielsen, Thomas Mailund
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    BMCBI
    2008
    111views more  BMCBI 2008»
    VisualRepbase: an interface for the study of occurrences of transposable element families
    13 years 8 months ago
    VisualRepbase: an interface for the study of occurrences of transposable element families
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    Background: Repbase is a reference database of eukaryotic repetitive DNA, which includes prototypic sequences of repeats and basic information described in annotations. Repbase al...
    Sébastien Tempel, Matthew Jurka, Jerzy Jurk...
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    BMCBI
    2007
    156views more  BMCBI 2007»
    Bio: : NEXUS: a Perl API for the NEXUS format for comparative biological data
    13 years 8 months ago
    Bio: : NEXUS: a Perl API for the NEXUS format for comparative biological data
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    Background: Evolutionary analysis provides a formal framework for comparative analysis of genomic and other data. In evolutionary analysis, observed data are treated as the termin...
    Thomas Hladish, Vivek Gopalan, Chengzhi Liang, Wei...
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    BMCBI
    2008
    134views more  BMCBI 2008»
    Identification of transcription factor contexts in literature using machine learning approaches
    13 years 8 months ago
    Identification of transcription factor contexts in literature using machine learning approaches
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    Background: Availability of information about transcription factors (TFs) is crucial for genome biology, as TFs play a central role in the regulation of gene expression. While man...
    Hui Yang, Goran Nenadic, John A. Keane
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