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BMCBI
2006
127views more  BMCBI 2006»
15 years 4 months ago
Using local gene expression similarities to discover regulatory binding site modules
Background: We present an approach designed to identify gene regulation patterns using sequence and expression data collected for Saccharomyces cerevisae. Our main goal is to rela...
Bartek Wilczynski, Torgeir R. Hvidsten, Andriy Kry...
BMCBI
2006
116views more  BMCBI 2006»
15 years 4 months ago
MICA: desktop software for comprehensive searching of DNA databases
Background: Molecular biologists work with DNA databases that often include entire genomes. A common requirement is to search a DNA database to find exact matches for a nondegener...
William A. Stokes, Benjamin S. Glick
BMCBI
2006
129views more  BMCBI 2006»
15 years 4 months ago
Improved alignment quality by combining evolutionary information, predicted secondary structure and self-organizing maps
Background: Protein sequence alignment is one of the basic tools in bioinformatics. Correct alignments are required for a range of tasks including the derivation of phylogenetic t...
Tomas Ohlson, Varun Aggarwal, Arne Elofsson, Rober...
CPHYSICS
2006
85views more  CPHYSICS 2006»
15 years 4 months ago
Simulation of n-qubit quantum systems. II. Separability and entanglement
Studies on the entanglement of n-qubit quantum systems have attracted a lot of interest during recent years. Despite the central role of entanglement in quantum information theory...
T. Radtke, S. Fritzsche
BMCBI
2007
148views more  BMCBI 2007»
15 years 4 months ago
Blast sampling for structural and functional analyses
Background: The post-genomic era is characterised by a torrent of biological information flooding the public databases. As a direct consequence, similarity searches starting with ...
Anne Friedrich, Raymond Ripp, Nicolas Garnier, Emm...
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