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BMCBI
2006
93views more  BMCBI 2006»
15 years 4 months ago
A summarization approach for Affymetrix GeneChip data using a reference training set from a large, biologically diverse database
Background: Many of the most popular pre-processing methods for Affymetrix expression arrays, such as RMA, gcRMA, and PLIER, simultaneously analyze data across a set of predetermi...
Simon Katz, Rafael A. Irizarry, Xue Lin, Mark Trip...
BMCBI
2007
177views more  BMCBI 2007»
15 years 4 months ago
The BioPrompt-box: an ontology-based clustering tool for searching in biological databases
Background: High-throughput molecular biology provides new data at an incredible rate, so that the increase in the size of biological databanks is enormous and very rapid. This sc...
Claudio Corsi, Paolo Ferragina, Roberto Marangoni
NAR
2007
132views more  NAR 2007»
15 years 4 months ago
TRED: a transcriptional regulatory element database, new entries and other development
Transcriptional factors (TFs) and many of their target genes are involved in gene regulation at the level of transcription. To decipher gene regulatory networks (GRNs) we require ...
C. Jiang, Zhenyu Xuan, Fang Zhao, Michael Q. Zhang
SIGMOD
2005
ACM
86views Database» more  SIGMOD 2005»
16 years 4 months ago
Lean middleware
This paper describes an approach to achieving data integration across multiple sources in an enterprise, in a manner that does not require heavy investment in database and middlew...
David A. Maluf, David G. Bell, Naveen Ashish
IDA
2008
Springer
15 years 4 months ago
Schema matching on streams with accuracy guarantees
Abstract. We address the problem of matching imperfectly documented schemas of data streams and large databases. Instancelevel schema matching algorithms identify likely correspond...
Szymon Jaroszewicz, Lenka Ivantysynova, Tobias Sch...