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ACIIDS
2010
IEEE
153views Database» more  ACIIDS 2010»
13 years 9 months ago
Visualization of Influenza Protein Segment HA in Manifold Space
Due to the lateral gene transfer, the phylogenetic tree may be inadequate for representing the evolution of Influenza A (H1N1) virus. This work employs the distance invariant manif...
Cheng-Yuan Liou, Wei-Chen Cheng
BMCBI
2008
130views more  BMCBI 2008»
13 years 7 months ago
A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm
Background: The process of horizontal gene transfer (HGT) is believed to be widespread in Bacteria and Archaea, but little comparative data is available addressing its occurrence ...
Sheila Podell, Terry Gaasterland, Eric E. Allen
BMCBI
2006
112views more  BMCBI 2006»
13 years 7 months ago
A phylogenomic gene cluster resource: the Phylogenetically Inferred Groups (PhIGs) database
Background: We present here the PhIGs database, a phylogenomic resource for sequenced genomes. Although many methods exist for clustering gene families, very few attempt to create...
Paramvir S. Dehal, Jeffrey L. Boore
NAR
2006
91views more  NAR 2006»
13 years 7 months ago
TreeFam: a curated database of phylogenetic trees of animal gene families
TreeFam is a database of phylogenetic trees of gene families found in animals. It aims to develop a curated resource that presents the accurate evolutionary his20 tory of all anim...
Heng Li, Avril Coghlan, Jue Ruan, Lachlan James M....
CSB
2005
IEEE
129views Bioinformatics» more  CSB 2005»
14 years 1 months ago
Consensus Methods Using Phylogenetic Databases
Andreas Kramer, Daniel R. Richards, James O. Bowlb...